tool for ngs data visualization and statistical analysis Search Results


vardict tool  (AstraZeneca ltd)
90
AstraZeneca ltd vardict tool
Vardict Tool, supplied by AstraZeneca ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/vardict+version+1+6/pmc10352584-286-4-7
Average 90 stars, based on 1 article reviews
vardict tool - by Bioz Stars, 2026-10
90/100 stars
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alamut visual v2 7 software  (Sophia Genetics)
97
Sophia Genetics alamut visual v2 7 software
Alamut Visual V2 7 Software, supplied by Sophia Genetics, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/Alamut+Visual+Plus/pmc05386419-186-16-16
Average 97 stars, based on 1 article reviews
alamut visual v2 7 software - by Bioz Stars, 2026-10
97/100 stars
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strand ngs 4.0 software  (Strand Life Sciences Private)
90
Strand Life Sciences Private strand ngs 4.0 software
Strand Ngs 4.0 Software, supplied by Strand Life Sciences Private, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/strand+ngs+software/10__2139_slash_ssrn__4282750-63-6-10
Average 90 stars, based on 1 article reviews
strand ngs 4.0 software - by Bioz Stars, 2026-10
90/100 stars
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clc ngs cell  (CLC Bio)
90
CLC Bio clc ngs cell
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Clc Ngs Cell, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/clc+ngs+cell/pmc02712089-219-66-71
Average 90 stars, based on 1 article reviews
clc ngs cell - by Bioz Stars, 2026-10
90/100 stars
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ripseq ngs software  (Pathogenomix Inc)
90
Pathogenomix Inc ripseq ngs software
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Ripseq Ngs Software, supplied by Pathogenomix Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/ripseq+ngs+software/pmc10654859-125-7-10
Average 90 stars, based on 1 article reviews
ripseq ngs software - by Bioz Stars, 2026-10
90/100 stars
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benchlab ngs  (Cartagenia Inc)
90
Cartagenia Inc benchlab ngs
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Benchlab Ngs, supplied by Cartagenia Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/bench+lab+ngs/pmc06777611-13093-22-21
Average 90 stars, based on 1 article reviews
benchlab ngs - by Bioz Stars, 2026-10
90/100 stars
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reference standard ngs  (MedCalc Software Ltd)
90
MedCalc Software Ltd reference standard ngs
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Reference Standard Ngs, supplied by MedCalc Software Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/reference+standard+ngs/pm40439429-91-13-22
Average 90 stars, based on 1 article reviews
reference standard ngs - by Bioz Stars, 2026-10
90/100 stars
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ngs genomics analysis software (quantseq-fwd  (Bluebee Inc)
90
Bluebee Inc ngs genomics analysis software (quantseq-fwd
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Ngs Genomics Analysis Software (Quantseq Fwd, supplied by Bluebee Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/ngs+genomics+analysis+software++quantseq+fwd/bio_rxiv__747030-275-10-9
Average 90 stars, based on 1 article reviews
ngs genomics analysis software (quantseq-fwd - by Bioz Stars, 2026-10
90/100 stars
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partek flow ngs software  (Partek)
86
Partek partek flow ngs software
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Partek Flow Ngs Software, supplied by Partek, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/flow+partek+software/pmc12758812-149-5-5
Average 86 stars, based on 1 article reviews
partek flow ngs software - by Bioz Stars, 2026-10
86/100 stars
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downsample sam/bam tool of ngs picard tools  (Broad Institute Inc)
90
Broad Institute Inc downsample sam/bam tool of ngs picard tools
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Downsample Sam/Bam Tool Of Ngs Picard Tools, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/downsample+sam+bam+tool+of+ngs+picard+tools/10__1515_slash_dna___2015___0019-86-10-13
Average 90 stars, based on 1 article reviews
downsample sam/bam tool of ngs picard tools - by Bioz Stars, 2026-10
90/100 stars
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avadis ngs software ver.2.7  (Strand Genomics Inc)
90
Strand Genomics Inc avadis ngs software ver.2.7
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Avadis Ngs Software Ver.2.7, supplied by Strand Genomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/avadis+ngs+software+ver+2+7/pm28871001-60-19-23
Average 90 stars, based on 1 article reviews
avadis ngs software ver.2.7 - by Bioz Stars, 2026-10
90/100 stars
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snp markers infinium  (INFINIUM Inc)
90
INFINIUM Inc snp markers infinium
Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.
Snp Markers Infinium, supplied by INFINIUM Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/tool+for+ngs+data+visualization+and+statistical+analysis/snp+markers/pmc05557542-127-36-35
Average 90 stars, based on 1 article reviews
snp markers infinium - by Bioz Stars, 2026-10
90/100 stars
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Image Search Results


Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.

Journal: PLoS ONE

Article Title: Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling

doi: 10.1371/journal.pone.0006323

Figure Lengend Snippet: Times (in seconds) for mapping 100,000 reads of 100 bp vs genome with different programs in the four organisms analyzed.

Article Snippet: The in silico generated reads were mapped either to the transcriptome or the complete genome using different programs: BLAT (parameters –oneOff 1), SSAHA2 (parameters –skip 2, -diff 0, -kmer 13, -solexa for 35 bp and 50 bp reads; -454 for 100 bp reads), Bowtie (parameters –k 1, -n 3, -e 2000), SeqMap (number of mismatches = 3), MAQ (parameters –n 3, -e 2000) and the commercial tool CLC NGS Cell [ www.clcbio.com ] (algorithm: clc_ref_assembly_long , parameters: -r ignore).

Techniques: